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INDEL REGION MODULE (batch mode)


This form is for batch (multiple alignment) mode. For submitting single alignments, please turn off the batch mode and enable the single alignment mode by clicking the button below.

DATA INPUT

Input file for the batch mode MUST be prepared using seqFIREprep. SeqFIRE will not accept the regular input file in FASTA format. A python script for preparing such files is available in the download section.

Short example alignments can be loaded via the buttons below the text box.

  • INDEL PARAMETER VALUES


  • Partial treatment(choose this option for incomplete sequences)
    Twilight treatment (choose this option for diverse sequences)

    Amino acid conservation threshold: %

    Amino acid substitution group:

    Inter-indel space (1-10 residues):  

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