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CONSERVED BLOCK MODULE (batch mode)


This form is for batch (multiple alignment) mode. For submitting single alignments, please turn off the batch mode and enable the single alignment mode by clicking the button below.

DATA INPUT

Input file for the batch mode MUST be prepared using seqFIREprep. SeqFIRE will not accept the regular input file in FASTA format. A python script for preparing such files is available in the download section.

Short example alignments can be loaded via the buttons below the text box.


  • GENERAL CONSERVED BLOCK PARAMETER VALUES


    Percent accept gaps:

    Amino acid conservation threshold: %

    Amino acid substitution group:

    Minimum size of conserved block (1-10 residues):  

    Maximum size of nonconserved block (1-25 residues):  


    COMBINATION OF CONSERVED BLOCK PROFILES



    INTERSECTION the similarity and entropy profiles (strict)
    UNION the similarity and entropy profiles (lenient)


    CO-ANALYSIS WITH INDEL REGION MODULE



    Co-analysis with indel region module (Use will get conserved block together with indel metrix.)
    Use conserved block module alone




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